segmentation

Topic Replies Views Activity
Ilastik best file format for pixel classification
Image Analysis
fiji ,  segmentation ,  ilastik
11 257 March 16, 2021
Libtorch models for 3D nuclei segmentation
Development
segmentation ,  python ,  machine-learning ,  pytorch ,  libtorch
2 81 March 15, 2021
Multipoint then move area
Image Analysis
fiji ,  imagej ,  segmentation
0 33 March 14, 2021
Automated ROI movement through stack
Image Analysis
fiji ,  segmentation
0 41 March 11, 2021
Finding profiles of overlapping cells
Image Analysis
fiji ,  imagej ,  segmentation
0 41 March 11, 2021
Overlay minFeret and Feret onto carbide outlines/mask
Image Analysis
analyze-particles ,  imagej ,  plugin ,  macro ,  segmentation ,  python
2 57 March 9, 2021
[NEUBIAS Academy@Home] Webinar “Big Data IV: Visualizing, Sharing and Annotating Large Image Data in the Cloud” + Questions & Answers
Announcements
fiji ,  segmentation ,  catmaid ,  neubias ,  neurite-tracing ,  connectomics ,  mobie
0 218 March 8, 2021
Using Read and Write Excel with 3D Manager Results
Image Analysis
fiji ,  imagej ,  plugin ,  segmentation
8 103 March 4, 2021
Weka trainable segmentation plugin
Image Analysis
fiji ,  imagej ,  segmentation
0 46 March 2, 2021
QuPath-Python Import/Export instance segmentation masks for binary classification
Image Analysis
segmentation ,  python ,  qupath
13 181 March 2, 2021
Overlapping stains in blood spatter
Image Analysis
fiji ,  imagej ,  plugin ,  segmentation
0 42 March 1, 2021
Segmenting overlapping/ touching nuclei with scikit_image
Image Analysis
segmentation ,  scikit-image
2 121 February 28, 2021
Segmentation of Neurits/Dentrits
Image Analysis
segmentation
0 39 February 26, 2021
Segmentation of individual tiles and region merging after stitching
Image Analysis
segmentation
12 479 February 25, 2021
SWC extension tracing issue
Usage & Issues
imagej ,  plugin ,  segmentation ,  snt
6 679 February 25, 2021
Trainable Weka Segmentation works/lagging after updating FIJI
Image Analysis
fiji ,  plugin ,  segmentation
0 31 February 25, 2021
Cell segmentation on cell borders (rather than nuclei) - trouble with cellprofiler
Image Analysis
cellprofiler ,  segmentation
9 240 February 23, 2021
QuPath - class prediction view is missing some classes
Usage & Issues
segmentation ,  roi ,  qupath
4 43 February 23, 2021
ImageJ and Volume Measurement - Cavalieri's principle
Image Analysis
imagej ,  plugin ,  segmentation ,  volume
0 58 February 22, 2021
2D-3D image registration
Image Analysis
fiji ,  imagej ,  segmentation ,  roi ,  python ,  ilastik ,  napari
2 108 February 22, 2021
Trainable Weka segmentation - Gaussian blur radius settings incorrect?
Development
fiji ,  imagej ,  segmentation
2 52 February 22, 2021
Multi Otsu - Plug In Not working
Image Analysis
fiji ,  plugin ,  segmentation
0 45 February 18, 2021
WEKA Segmentation issue with Python
Usage & Issues
fiji ,  jython ,  imagej ,  batch-processing ,  segmentation ,  python
2 459 February 18, 2021
Circular particle thresholding and identification
Image Analysis
fiji ,  imagej ,  segmentation ,  thresholding
2 71 February 18, 2021
Threshold resets while adjusting
Usage & Issues
fiji ,  segmentation ,  thresholding
0 33 February 17, 2021
Fitting a smooth border to "rugged" shape
Image Analysis
segmentation ,  shape ,  scikit-image
8 159 February 16, 2021
ImageJ SNT; how to convert Paths in Path Manager to a segmented mask image?
Image Analysis
fiji ,  imagej ,  neuroanatomy ,  plugin ,  macro ,  segmentation ,  scripting ,  snt
9 182 February 16, 2021
Fibre analysis in microscopy images
Image Analysis
fiji ,  segmentation
1 134 February 11, 2021
Creating Z stacks out of .vsv files - super noob here, please advise!
Image Analysis
segmentation ,  z-stack
4 90 February 15, 2021
Tools for 3D bounding box annotations?
Image Analysis
segmentation ,  annotation
0 137 February 12, 2021