scripting

Topic Replies Activity
Transferring k-means clustering data back into QuPath 40 February 27, 2020
Export 2D TrackMate spots to ROI Manager via Jython scripting 4 February 27, 2020
Measure intensity color of bacteria in two different picture 1 February 27, 2020
Ij1 macro query to gather "true" uncompressed image size 3 February 25, 2020
Problems when running particle analyzer in headless mode 10 February 21, 2020
Discussion and Script: What is a hotspot? 3 February 17, 2020
Is it possible to minimise Feret Angle automatically? 7 February 17, 2020
Importing binary masks in QuPath 18 February 13, 2020
Best way to script with Groovy (Calculating the L1 norm of an image difference) 5 January 20, 2020
Interactive tracking followed by scripting TrackMate 5 December 20, 2019
Linear Motion LAP Tracker maximal amount of tracks 17 December 17, 2019
Script hangs on MacOS with external drive 10 December 15, 2019
How to coordinates from the image by color code? 3 December 11, 2019
Cannot invoke method setPathClass() on null object error 5 December 10, 2019
Subtract annotations in 0.2.0-m5 4 December 10, 2019
How to get glare/reflection free image from multiple images 6 December 9, 2019
Check if image corrupt before opening via ImageJ macro 7 December 8, 2019
Simple Neurite Tracer: Split Path between branch points and between branch and terminal points 3 December 8, 2019
IF Colocalization Calculations for QuPath 2 December 6, 2019
Opening raw file using IJ.openImage() function in Jython 3 December 6, 2019
Running headless macro with Directory as passed argument 1 December 4, 2019
QuPath Script: UI for class visibility selection 2 December 2, 2019
Scripting Marker-Based Watershed 6 December 2, 2019
How to detect polygon line from the image? 4 December 2, 2019
Intensity Projection on a Multichannel hyperstack 3 December 1, 2019
QuPath Script: Nearest Neighbors 2 November 29, 2019
Detect the width of a valley in an array: Analyzing line profiles 3 November 29, 2019
How to automate the count of micronuclei in fluorescence images - a request for help 3 November 25, 2019
Need a macro to eliminate black slices in a stack 4 November 19, 2019
Filter annotations by area 11 November 14, 2019