registration

Topic Replies Views Activity
Automatically align and rotate images
Image Analysis
fiji ,  cellprofiler ,  imagej ,  registration
22 1638 November 26, 2020
Register Virtual Stack Slices - Batch Run on Multiple Folders with Jython Script
Image Analysis
fiji ,  imagej ,  registration ,  macro ,  bunwarpj ,  virtualstack ,  imagej-macro
0 50 November 14, 2020
Images registration/alignement, export aligned images
Usage & Issues
registration ,  qupath
20 487 November 6, 2020
Degradation of image quality after running Align Image by line ROI plugin (.tif files)
Image Analysis
plugin ,  registration ,  roi
3 56 October 27, 2020
Registration of 3D ultrasound image
Image Analysis
registration ,  timelapse ,  ultrasound
0 48 October 26, 2020
Image segmentation along grain boundaries and correlation of potential map (obtained with an AFM technique) with chemical content (SIMS map)
Image Analysis
fiji ,  analyze-particles ,  imagej ,  registration ,  segmentation ,  thresholding ,  python
0 45 October 22, 2020
Automating fiducial-based image registration using BigWarp
Image Analysis
registration ,  macro ,  bigwarp ,  table-conversion
11 289 October 20, 2020
How to align similar outdoor photos automatically and crop them to maximal photo size
Image Analysis
fiji ,  imagej ,  registration ,  alignment
7 131 October 17, 2020
TrakEM2 Import from Text File
Usage & Issues
fiji ,  registration ,  trakem2
2 109 October 14, 2020
Python API for working with brain atlases
Announcements
visualization ,  registration ,  python ,  neuroscience
7 231 October 10, 2020
How to use Rigid registration
Image Analysis
fiji ,  plugin ,  registration ,  microscopy
0 59 October 2, 2020
Development of Python-based 2D section -> 3D atlas registration tool
Development
registration ,  python ,  napari ,  neuroscience
18 893 September 30, 2020
Compare 2 stacks in different resolution and position
Image Analysis
fiji ,  3d ,  imagej ,  registration ,  bone ,  stacks ,  rotation
0 52 September 26, 2020
Comparison of some tools for brain slice to atlas registration
Usage & Issues
registration ,  neuroscience
0 220 September 24, 2020
Planned dev - nonlinear elastix imglib2 transforms (feedback requested)
Development
imglib2 ,  registration ,  elastix
21 411 September 10, 2020
Automatically Crop Registered Image Stack
Image Analysis
fiji ,  jython ,  imagej ,  registration
0 90 September 1, 2020
Descriptor based registration: How to reuse the 3d-affine model
Usage & Issues
fiji ,  plugin ,  registration ,  descriptor-based-reg
4 128 August 28, 2020
Best registration tool for 3D electron microscopy images?
Image Analysis
imagej ,  registration ,  python
1 95 August 26, 2020
How to apply slice alignment coordinates of one stack to another?
Image Analysis
fiji ,  imagej ,  registration ,  stack ,  alignment
12 1140 August 5, 2020
Lecture about Bio-Image Analysis
Announcements
fiji ,  imagej ,  registration ,  macro ,  segmentation ,  python
18 972 July 31, 2020
Registering 3D image Sequence - Stabilizing a point of interest
Image Analysis
imagej ,  registration ,  3d-rois
3 155 July 15, 2020
QuPath- Multiple Image Alignment and Object Transfer
Image Analysis
registration ,  qupath ,  alignment
11 1269 July 5, 2020
Locate field of view (cell bodies) in larger image (nuclei)
Image Analysis
imagej ,  registration ,  features ,  mops ,  sift ,  patch-matching
4 154 June 11, 2020
Aligning and combining multiple multichannel fluorescence images to create one hyperpexed image
Image Analysis
imagej ,  registration ,  alignment
16 2807 June 10, 2020
Multi-Template Matching to align slices in stack and issue when used with FIJI 1.53b
Usage & Issues
fiji ,  imagej ,  registration ,  template-matching ,  multi-template-match
1 128 June 5, 2020
Optical flow works poorly on simulated data
Image Analysis
registration ,  optic-flow ,  scikit-image
3 219 May 16, 2020
Error attempting alignment of multichannel TIFF (and workaround)
Usage & Issues
registration ,  qupath
6 144 April 10, 2020
How to transform points locations (csv) with bigwarp
Image Analysis
fiji ,  registration ,  csv ,  bigwarp
9 196 March 27, 2020
Interative Rigid Command not working in ImageJ Fiji
Image Analysis
registration ,  imagej-fiji
4 117 March 20, 2020
Aligning image stack using MultiStackReg to reference stack
Image Analysis
imagej ,  registration ,  alignment
1 149 March 20, 2020