registration

Topic Replies Views Activity
Registration of whole slide images at cellular resolution with Fiji and QuPath
Announcements
fiji ,  imglib2 ,  registration ,  qupath ,  wsi ,  bigwarp ,  elastix
23 531 April 16, 2021
QuPath arbitrarily transform detections and annotations
Development
imglib2 ,  registration ,  qupath ,  bigwarp ,  imglib2-realtransfor
17 198 April 14, 2021
Registration of multi-channel timelapse with Linear Stack Alignment with SIFT
Usage & Issues
fiji ,  imagej ,  registration
14 222 March 23, 2021
FileInfo parameter error
Usage & Issues
jython ,  registration ,  batch-processing ,  imagej-macro
0 32 March 18, 2021
Does transformation matrix from Register Virtual Stack work with TransformJ plugin?
Image Analysis
imagej ,  affine-transform ,  registration
14 3434 October 8, 2019
Development of Python-based 2D section -> 3D atlas registration tool
Development
registration ,  python ,  napari ,  neuroscience
24 1590 March 4, 2021
Registering images from consecutive physical sections
Image Analysis
fiji ,  registration
5 101 March 4, 2021
Registration running time between QuPath and openslide-python using FindTransformECC
Image Analysis
registration ,  opencv ,  qupath
2 67 March 2, 2021
Register Virtual Stack Slices (real) user manual
Image Analysis
fiji ,  registration
2 193 March 1, 2021
(Elastix-) Registration of images after downsampling with different factors
Image Analysis
imagej ,  affine-transform ,  registration ,  elastix
6 99 February 26, 2021
Register virtual stack slices and maximum image size
Image Analysis
fiji ,  registration ,  sift
0 45 February 17, 2021
2D image to 3D atlas mapping
Image Analysis
registration
3 216 February 13, 2021
Aligning and combining multiple multichannel fluorescence images to create one hyperpexed image
Image Analysis
imagej ,  registration ,  alignment
18 3641 February 10, 2021
bunwarpJ in macro headless
Usage & Issues
fiji ,  plugin ,  registration ,  macro ,  bunwarpj
0 43 February 4, 2021
Registration of rotation
Image Analysis
registration ,  python ,  scikit-image
2 101 January 21, 2021
Interpretation of Affine3D OpenSPIM registration values
Usage & Issues
fiji ,  imagej ,  registration ,  openspim
0 79 December 11, 2020
Planned dev - nonlinear elastix imglib2 transforms (feedback requested)
Development
imglib2 ,  registration ,  elastix
22 568 December 4, 2020
Automatically align and rotate images
Image Analysis
fiji ,  cellprofiler ,  imagej ,  registration
22 2558 November 26, 2020
Register Virtual Stack Slices - Batch Run on Multiple Folders with Jython Script
Image Analysis
fiji ,  imagej ,  registration ,  macro ,  bunwarpj ,  virtualstack ,  imagej-macro
0 107 November 14, 2020
Images registration/alignement, export aligned images
Usage & Issues
registration ,  qupath
20 966 November 6, 2020
Degradation of image quality after running Align Image by line ROI plugin (.tif files)
Image Analysis
plugin ,  registration ,  roi
3 103 October 27, 2020
Registration of 3D ultrasound image
Image Analysis
registration ,  timelapse ,  ultrasound
0 70 October 26, 2020
Image segmentation along grain boundaries and correlation of potential map (obtained with an AFM technique) with chemical content (SIMS map)
Image Analysis
fiji ,  analyze-particles ,  imagej ,  registration ,  segmentation ,  thresholding ,  python
0 84 October 22, 2020
Automating fiducial-based image registration using BigWarp
Image Analysis
registration ,  macro ,  bigwarp ,  table-conversion
11 343 October 20, 2020
How to align similar outdoor photos automatically and crop them to maximal photo size
Image Analysis
fiji ,  imagej ,  registration ,  alignment
7 244 October 17, 2020
TrakEM2 Import from Text File
Usage & Issues
fiji ,  registration ,  trakem2
2 181 October 14, 2020
Python API for working with brain atlases
Announcements
visualization ,  registration ,  python ,  neuroscience
7 471 October 10, 2020
How to use Rigid registration
Image Analysis
fiji ,  plugin ,  registration ,  microscopy
0 103 October 2, 2020
Compare 2 stacks in different resolution and position
Image Analysis
fiji ,  3d ,  imagej ,  registration ,  bone ,  stacks ,  rotation
0 78 September 26, 2020
Comparison of some tools for brain slice to atlas registration
Usage & Issues
registration ,  neuroscience
0 421 September 24, 2020