I’m new to this software. It looks pretty comprehensive and seems to get good reviews, but there’s clearly quite a learning curve when you’re new.
I was wondering if you had any tips on how to set up a pipeline for identifying worm eggs (mostly nematode genera from farm animals) in images. I have tried adapting one of the template pipelines but I’ve had no luck. It seems to ignore the eggs and instead draw irregular divisions based on invisible background gradients, so the result looks more like a country map of Europe. I’m guessing that finding the right threshold may be part of the issue?
My microscope images are 2592x1944 px, colour, 24 bit. The worm egg dimensions range roughly from about 200-600px long and 110-250px wide (covering a variety of genera). I’ll attach an example one once I work out how. [Update: I can’t see a way of doing that!]
Many thanks for your help!