I am new to QuPath and played arround a little bit with this nice program (m9).
I managed to get my files from a zeiss z.1 into QuPath without problems.
With Analyze–> Preprocessing --> Simple Tissue Detection I get my tissue detected.
But now I struggle to go further.
I have 2 projects running:
We have HE or PAS stained slides of kidney biopsies and I want to detect the number of glomerula inside my tissue and in this glomerula the number of stained nuclei.
DAB stained kidney biopsies with different markers. We want to detect the stained nuclei inside the glomerula.
So my question is. Is there a way to autodetect glomerula in slide images? Some biopsies contain only 2 or 3. Others contain 40 glomerula.
Can s.b please point me to the right direction?