I’m using python (via
tifffile) to save tiff stacks as composites. When I open these stacks in ImageJ, each channel is assigned a colormap/LUT, however they are not the color assignments that I would prefer. I’d like to specify each channel’s colormap when I’m saving the images using
tifffile, however I can’t figure out how to do this.
My question is where is the information about channel colormap stored in a tiff stack?
If I open a tiff stack and manually change the colormap assignment for a channel, save, close, and then open it again, my manual colormap assignments are preserved. So I know this information must be stored in some metadata somewhere, but I can’t find it.