I wanted to share with you my latest improvement for video analysis. If you are doing simple video processing like this thread, then cellprofiler is actually a bit overkill for this problem.
Instead what you want to do is a mix of
- Use CellProfiler to identify objects. Since cell profiler is the best in the regard.
- Load this newly created image into python, and work through the problem with a script.video_processing_example.zip (1.7 KB)
This example includes using the nd2reader package.
I’m happy to answer any question regarding this method, and leave feedback if it helped you.