We’re happy to announce a new publicly available project by our team : EasyXT-Fiji.
Even if we prefer to rely on fully open-source solutions, Imaris has been a great tool during the past years. As we already developed a EasyXT in Matlab, we decided to go with one of our favourite tools: Fiji.
Briefly, EasyXT-Fiji will allow you to use Imaris as a minion from Fiji, for example using a groovy script you can open an imaris file, detect spots and surfaces in Imaris, get their masks of labels in Fiji, make use of your favorite ImageJ plugin and send back to Imaris additional channel and objects.
Currently, we are working on getting the API to work and stabilize, before creating ImageJ Commands that can be macro-recorded. This project is mainly intended to be used as an API when writing Groovy scripts. For that purpose, the demo folder might be the most interesting!
We’re happy to get your feedback and issues on github,