I’m attempting to filter objects based upon measurements collected and rules identified using CPA. I’ve run a general pipeline to first obtain the measurements, classified and identified rules in CPA, saved rules in a *.txt file and loaded these rules in FilterObjects module using the same pipeline HOWEVER I recieve the below error message…Thoughts?
Traceback (most recent call last):
File “cellprofiler\gui\pipelinecontroller.pyc”, line 1019, in do_step
File “cellprofiler\modules\filterobjects.pyc”, line 393, in run
File “cellprofiler\modules\filterobjects.pyc”, line 646, in keep_by_rules
File “cellprofiler\utilities\rules.pyc”, line 133, in score
File “cellprofiler\utilities\rules.pyc”, line 58, in score
File “cellprofiler\measurements.pyc”, line 528, in get_current_measurement
File “cellprofiler\measurements.pyc”, line 553, in get_measurement
File “cellprofiler\utilities\hdf5_dict.pyc”, line 194, in getitem
When I roll my curser over the ‘Rules file name’ It claims that some measurements have yet to be collected…however ALL measurement modules are listed BEFORE the FilterObjects module. Am I missing something obvious such as a simple ordering of modules?
Please help! Thank you!