First off! Thank you so much for the help in the past at answering my questions and queries. You’ve really helped me and given this lowly undergraduate a lot to do and enough hopefully to get a summer internship in my lab.
My question today is an idea I’ve had for building a classification machine learning system, I just need some help getting images from imageJ as output data.
Having used the 3D object counter and the 3D object Manager - Is there a method I can use that will:
- for each object find it’s centre
- Locate the slide it is in
- Jump to that slice
- Export slice as a flat image with a specific name i.e. “object4.png”
Many thanks if anyone is able to help! Will make my life so much easier when I hit process for my 1000 or so images.