I’ve set up a pipeline that works perfect for the type of image analysis that I want to do, which is part of a HTS ( or HCS).
But, a very simple procedure goes rather wrong, and this is the order that CP choses to retrieve the images from the subfolders that I put them in.
For instance, if I have subfolders named as Plate0, Plate1, Plate2,…Plate10, 11, … 20, and so on, CP will open the folders in the following order: 0,1,10,11,12,13,14,15,16,17,18,19,2,20,21…29,3,30 and so on (instead of 0,1,2,3,4,5,6…).
So as you can see, this doesn’t make much sense (at least to me). Is there a way to solve this problem?
Additionally, I cannot find the way to have a column indicating from which subfolder the image for the analysis was taken from once the data is exported to a spreadsheet, which would somehow solve the first problem.
It would be great if you could help me on this one!
Thank you very much in advance!
And congratulations for the whole Cell Profiler project, it is simply awesome!