I am using FIJI and trying to open .ND2 files with Bio-Formats. My stacks have 139 slices and no series, but when I open them with Bio-Formats it offers me 6 series, all of which open 92 slices when opened and all of these slices are black with no signal.
I have tried changing the settings in Bio-Formats to disable chunkmap and to use the Nikon library to open, same thing. I am able to open these images with the Nikon ND2 plugin for ImageJ, but I am then unable to do any processing on the images (max projections etc.) because ImageJ doesn’t work with that plugins image window. They also open fine in Nikon’s NIS viewer.
What else can I try to open these files in ImageJ/FIJI?
Thank you everyone!