I created a tutorial on how to write a APEER module using Fiji python scripting scripting. It explains all things needed to put Fiji inside a docker container, test it locally and publish it as an APEER module.
Of course one can also use the scripting code without the APEER platform locally.
- the tutorial can be found here: Fiji_Python_Tutorial
- for or those who what to did deeper please go to: https://docs.apeer.com/
On APEER there are already some modules that use Fiji and some of its plugins. Some of them use a collections of tools which can be found here: fijipytools.py
All those scripts are free to use for whatever they might be useful . Use them at your own risk. They are probably not “perfect”, so feedback and corrections are welcome.