Hey QuPath Community,
I have two images that are almost identical but differ in some artifacts and stain. On one image it is easier to see my region of interest and mark it with an annotation then it is with the other. I am wondering if it is possible to:
Align the images using the image overlay alignment tool
Copy and transfer the annotation to the other image so they have the same exact ROI
I have read a few topics like this on the forum but when I apply them they haven’t seemed to do exactly what I need them to. I have little coding experience (maybe I should get some) so the whole scripting part of this is a bit out of my league at the moment.
Here is what I am talking about:
This is a snip of the original images overlaid.
Here is them overlaid (manually done)
So I would like the annotation to be on the H&E image in the project as well. Is this possible? I dont want this run for a whole project, just two images as I have duplicates (and soon 3 different stained images) that I would like to apply this too.
As always, any and all help is welcome and appreciated!