TrakEM2, 2D stitching including brightness correction


I want to do a 2D montage with 4 EM tiles in my first test. I opened them by “import” -> “import sequence as grid”.
For montage, I selected all tiles -> “patch” -> “montage”.
“Phase correlation”-> 20% tile overlap

The result was ok, but the overlapping borders showed dark bars. Is it possible to include an automatic brighness
adjustment here?


Can you post a screenshot showing the problem?

In any case, you can always try blending the images to remove the “dark bars”.


thank you for the tip, it looks a little bit better now, I will continue with TEM images,
the FeSEM images are too dark at the neighbouring edges.

1 Like