I am new to image analysis and I am trying to analyse whole slides from tumours in QuPath v0.2.3. I have already watched @petebankhead tutorials on youtube but still struggling to build an algorithm and train QuPath.
What I have done was to select an area and to annotate two regions (tumour / stroma). Cell detection and positive DAB cells works fine in the annotated region however it does not differentiate between tumour and stroma. Moreover, I cannot make it to QuPath to “learn” where in the remaining slide are tumour and stroma areas.
An additional issue might be the fact that I am working in a regular MacBook Pro and each image is 1Gb on average…
I would really be grateful if someone could help me. Cheers,