I am using trackmate since one month (I find it very powerful and easy to use ) and would like to have some additional options on it :
- See displacement vector of all tracks (unified or not), finally I did it with R but could be interesting to have directly on the image ?
- Reconnect tracks which are segmented, I have tested the “linear motion lap tracker” on simulated timelapse image with dots with linear motion but was surprised to find quite difficult to have the entire tracks on one block so maybe reconnect tracks could be a solution to my problem ? I can send you my images to test.
- Finally, the most important one, I would like to use trackmate in a macro to batch files with defined parameters on TrackMate (I dont’ think it is possible to call plugin from R directly ?). But I don’t find the complete description to do it and obtain my results, I need only (track_ID, X, Y).
Thanks so much, Mathieu Fallet