Recently, I have been using the tracking workflow in Ilastik to track migrating cells, which works rather well segmentation and tracking wise (thanks Ilastik =)).
The issue I have been running into, is that few tracks seem to make one or several big jumps (see histogram of step sizes and an example track). I have tried different combinations of tracking parameters, which ultimately did not change the output.
The tracking with learning workflow yields better results, since one can define a max. Distance. But there is no batch processing, making it rather cumbersome to track several videos.
Did anyone experience something similar or has any input on what one could try to get rid of these jumps?
Thanks a lot and best wishes,