I am currently using ilastik’s Tracking with Learning project to try and track cell trajectories. Things are not quite working as expected, so I was hoping I could check my workflow with someone:
- I use the Training applet to manually label a bunch of cell trajectories
- Then pressed Track! in the Tracking applet and exported the tracking data
- I scroll through the resultant tracked lineages (in the same ilastik GUI) to look over the results, notice that tracking can be improved, thus return to the Training applet to train more cells and repeat.
After doing this a few times (training more cells, pressing Track again, visually going through results, training more cells/etc) I realized I might not be doing things correctly because the tracking was not improving. This was when I realized that my Calculate Tracking Weights button is grayed out, so I got an academic license and downloaded gurobi910 and installed it per ilastik’s instructions, but the Calculate Tracking Weights button is still greyed out.
Am I using the wrong gurobi release? Is my iterative training/tracking workflow as described above the wrong way to use ilastik Tracking with Learning altogether?
Edit; i just noticed while running this tracking project headless that one of the WARNINGS says “structuredTrackingWorkflow 22271 140284772034368 Could not find any learning solver. Tracking will use flow-based solver (DPCT). Learning for tracking will be disabled!”, I’m guessing this means I did not install gurobi correctly, or it’s not compatible with gurobi910?