I have a project where I do an automated 3D segmentation to create a binary mask of (a single) 3D object. The segmentation works reasonably nice but the shape is not quite ok and some parts of the volume were not detected. The raw data quality varies, so full automation of the segmentation is unlikely and I need the user to correct the mask manually.
In ImageJ one solution would be to display every single slice of the mask as a ROI region and then correct it with the brush tool. This does not sound very efficient though and there are probably smarter ways (like interpolating regions, etc).
Does anyone know of existing tools which assist in correcting a 3D segmentation/mask? For example by doing automatic interpolations or suggestions, or by providing an efficient GUI, or other?
Thanks already for any hint!