I have an issue with .ndpi WSI coming from a particular slide scanner (Hamamatsu S60) not loading the high resolution image layers in QuPath. It seems like only the overview macro image is loaded but not 4x and higher.
This problem occurs only in QuPath M8 and according to my colleague, some older versions as well. These WSI could be opened in at least two other WSI viewers (Aperio ImageScope and NDP.view2) and viewed just fine.
I tried opening using OpenSlide and Bioformats in QuPath M8, but neither works. OpenSlide could open the macro image and Bioformats could not even load that properly.
In the log,
WARN: Tile request exception pops up whenever I try to zoom in.
Any ideas what may be causing the problem?
The slides I have are clinical samples for now so I’d rather not upload it, but I will be scanning some mouse sections and can upload them soon if you need those for troubleshooting.