TAPAS your new companion for batch processing v0.4

fiji
imagej
batch-processing
segmentation

#1

Hi,

TAPAS (Towards an Automated Processing and Analysis System) is an easy to use batch processing system for your every day need. It is based on a list of simple modules that you chain together to create your processing pipeline, no programming or complex linking required, just good old text file.

A new release of TAPAS is available on the TAPAS website. It includes new modules and tutorials for 2D and 3D measurements and quantification.

I also includes some modifications :

  • channels and frames start now at 1
  • module 3dfilters is renamed filters, parameters are radxy and radz, with radz=0 by default.
  • new modules watershedIJ (to separate particles in a binary image) and analyzeParticles.

Feedback and comments welcome.

Thomas