I am a beginner in ImgeJ/Fiji and have not much experience in programming.
I read and search a lot but I couldnt solve my problem.
I have multiple of images (over 1000) and I want to plot for every image a profile to get the intensity of the grey value along a line in the images. The line is constant, for every image the same.
And I want a table for each plot profile with the corresponding values of the peak/maxima.
I have tried two ways but without success:
I use this script https://imagej.nih.gov/ij/macros/StackProfilePlot.txt
I get a profile plot for each image but without a table of the maxima.
I use the plugin BAR to find peaks. I get a profile plot with corresponding values of maxima. But I cannot do it for multiple images. Just for one.
I hope you understand my problem and I hope someone know a solution or can give me a hint.