I have multiple of these streptomyces images grown in growth chambers. I would like to segment them from the growth chamber. I thought the trainable meka segmentation might be the best for this? Given how they look is there a good way to tune the training parameters? Once i have achieved a good segmentation I would like to extract the tips and branches. Is the skeletonize tool the best for this?
training_image1.tif (1.3 MB)