Stitching multiple sized stacks

Hello,

How do I stitch 256x256 and 512x512 stacks into one complete image? I tried pairwise stitching and 3D stitching.

Also, is there a way to view the stack and manually stitch?

Thank you for your help!

I just did a quick test with Pairwise Stitching, and it worked fine for me. Are you selecting a matching rectangular ROI in each of your two images to give it a hint before running the plugin?

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Thank you! It worked!

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