I used TrackMate within a script to detect spots on a z-stack (t=1,z-slices=31) resulting in a xml-file. I want to display the images/z-stack and the detected spots in TrackScheme so that I can compare the detection to the image and delete spots.
For that I used the script proposed by you in the Topic Starting trackscheme within script, doesn’t synchronize selections with hyperstackdisplayer. It starts TrackScheme and displays the spots contained in my xml-file.
But I have 2 questions:
a) The Spots are displayed in front of a black backround. How can I load the images (z-stack, tif-file) from the script into TrackScheme to compare the detection to?
b) Once I have deleted some wrongly detected spots, how can I save these changes to my xml-file?