I have tried to run your Stardist2D component in KNIME and I followed the installation instructions here: StarDist or Noise2Voide from KNIME .
But I run into the following error: “Execute failed: Cleaning Up;3:454:0:127: Insert Column Header 3:454:0:127:90: No name assignment for column “label” – set the appropriate option in the configuration dialog to keep the original column name.”
I can run your example using the worklfow here: CSBDeep_StarDist – KNIME Hub , but with my 2048x2048 image it runs into an input shape issue during a concatenation step (ConcatOp : Dimensions of inputs should match: shape = [1,128,124,124] vs. shape = [1,128,125,125])
What would be the best way to get stardist running for my images in KNIME?
BTW I joined the NEUBIAS KNIME workshop last week and it was great, thanks!