I have a stack of images, XY and T. For example, 7 time frames, in each frame, the tiff size is 1024*1024. The built-in viewer (opened after I import image sequences) can help me navigate through 7 time frames. Also, I can enjoy zoom in function.
I hope when I click at a position in the current viewer, a new panel would show the zoom in images at that position for all 7 frames, i.e., 7 images, the center of each image is the clicked position, the content is the neighbouring pixels to the center in that frame, e.g. 20*20 pixels surrounding the center.
Also, if I have a list of positions (Region of Interest), when I click one item (row) in that list, I hope the zoom in panel can show for that position.
I have read through the visualization category. But haven’t found a match. (The new panels of “Image>Stacks>Orthogonal Views” is a little bit like what I want on the click-and-show side.) So, is there a plugin already implemented that? If no, any suggestions on that. I’m new to Fiji. Prefer script language like bash, Python, Matlab. Java is also fine, need to go over it though. (I am analyzing images similar to illumina sequencing images, doing things like Image registration and base calling. )
Thanks very much!