Hi
I want to count spots per cell. I have managed to use the speckle counting pipeline and tweak it a bit and it seems to be working fine. My question is - is there a module or a setting that would allow me to get a number of spots per cell? I relate the spots to the cell but in my excel file it never gives me a total number for the spots per cell. It lists the intensity for every spot and next to it the number of the cell it comes from. I can then sum all these in excel but I feel like I am missing something. Is there a simpler way to get the total number of spots per cell?
Thanks,
Henriette