I am following the updated wiki: https://github.com/CellProfiler/CellProfiler/wiki/Source-installation-(Windows)
I removed my previously installed python 3.7 and made a fresh install of python 3.8 in C:\Program Files (x86) (for all users)
I have installed all the other components and python is on my path variables
I opened command prompt and I cd into the directory where I have cell profiler C:\Users\debbi\Documents\GitHub\CellProfiler> but when I type
pip install cython but i get "pip’ is not recognized as an internal or external command, operable program or batch file…
If I cd into the python 3.8 directory, i can install cython etc…
So should I install python in the cellprofiler directory instead of in the default location in appdata etc?