Hi there to all forum,
I’m facing some issues with SNT regarding calculation of some dendrites measuremets. I’ve roughly 100 picture that represent neurons. In each pictures multiple neurons are present.
From each neurons I want to trace different processes, length of dendrites and axons respectively. After annotating all the picture I want to run a script for getting the measurements for all the traced files I have.
The problem is that when I’ve multiple cells on the same trace there are problem in getting the measurements for the different compartments. I don’t understand what I’m doing wrong, and I’m starting to losing my mind.
when I click on Measure… and I select Distinguish Compartments I get this console error, for the same reason I get the same error also when I run the Batch Measurements script
java.lang.IllegalArgumentException: You can only select one connected set of paths for SWC export
The issue I think is related to some cell tracing, there are some missing path apparently but this is noticed only when I annotate the path with compartment informations. After that even if I remove annotation I get the same error. Other picture where I did not start this annotation work are quantified just fine…