11.tif (15.7 MB)
I am trying to measure pores in the soil. For this, I am using particle analyzer in bonej2 which provides me skeleton length and volume for each individual pore. I want to obtain an equivalent radius for each pore using the volume and length given by particle analyzer (considering pore as a cylinder)
Attached below, is the binary image of soil 6 cm deep (cropped from original 50 cm). However, bonej results give me skeleton length as 0 mm for most of the pores. why does it do that?
Also, I am interested in the surface area of each pore. But, bonej again cannot create a surface mesh for most of the pores whereas if I use the 3D object counter it gives me non zero surface area values for all pores (i think object counter uses different methods instead of generating the mesh, unlike bonej). Is it possible to pick surface area value from the 3D object counter and relate with volume and length from the bonej particle analyzer for each individual pore?
Can anyone please help in solving this problem?