I’m running the developer version of CellProfiler 2.0 on Mac OS 10.6. When the main window opens on startup it is not wide enough. It can’t show all of the items in the “Output Filename” line without them overlapping. It works fine if I enlarge the window. It would be nice if the window size was settable on the Preferences pane. Even nicer would be to open at the same size it was when the program last exited.
Would you mind submitting a screenshot of CellProfiler on startup, as a reference?