I am experiencing issues while using the Simple Neurite Tracer plugin, and I hope that someone has the knowledge on how to fix this (i.e. changes in settings somewhere). I start a path by clicking on a dendrite, but when I click the second time to create a path, the program prefers to trace along on the way outer edge, as if it is avoiding tracing the dendrite. It’s as if the plug-in’s preferences are for darker shades of the image (the dark background) rather than the brighter shades (the white dendrites). What’s strange is this only happens on a few images, but this weird issue makes it very difficult to trace these few images accurately.
The version of ImageJ I am using is 1.52p.