Sholl Analysis via Single Neurite Tracer is not analyzing certain cells

Hello,

I am attempting Sholl Analysis of 2D tracings of microglia made through Single Neurite Tracer plugin. However, Sholl analysis is not completing on certain cells with no definable pattern. I mark the center single point as a ‘soma’ and branch from there. Some cells are easily analyzed. Other cells simply return ‘Sholl: Analysis started…’ in the console and ‘Obtaining profile…’ in the toolbar, but without producing any results.

I have updated Java, and the SNT plugin is version 3.1.105. Any help would be appreciated.

Thank you,
Keith

This is the same issue described in this thread. There is also an open issue to track feedback on how to tackle this in a more effective manner, relatively to the current workaround.