Set up a High Content Screening Imaging Platform with Label Studio

Hi all,

I wrote up a tutorial for how you can create a custom labeling and annotation platform for HCS data with bounding boxes and/or semantic segmentation. The annotation files are JSON files which can be manipulated during a CellProfiler pipeline or other ML process. I demonstrated this with C Elegans data, but you can use any dataset. :wink:

Tutorial -

If you prefer to watch rather than read I created a video demonstration -

And thanks to the Broad BioImage Benchmark Collection for supplying the dataset!

If you have any questions please don’t hesitate to reach out to me at

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