The images that I want to analyze with CellProfiler are located in a folder structure as follows: A main data folder containing several subfolders containing each the images of a set. (One set of images has the size of around 2000 images).
Now I would like to process the subfolders in batches (one subfolder per batch), but not in parallel but sequentially and receive for each subfolder a separate output file (e.g. DefaultOUT1, DefaultOUT2, etc.) Is there a module with which I can do this other than starting the analysis for each subfolder manually?
I am grateful for help