I’m a complete novice in imaging/Fiji, and can’t find a solution for the next task:
I have an image of multiple nuclei, which I segmented using the StarDist plugin. StarDist highlighted all segmented nuclei as ROI. In the centre of the image, I have an anatomical region, within which I need to measure the cell nuclei quantity and area. So, on a single image, I have multiple ROIs of cell nuclei and one big ROI of the anatomical region.
How do I exclude the cell nuclei ROI outside the big ROI of the anatomical region?
I believe this post has a similar problem, but I do not understand the code and how to use it in practice:
Many thanks for your help,