I am currently working on a image segmentation project with data from the ISBI-2012 segmentation challenge. I am trying to run the BeanShell script at this link:
on my own predicted segmentation images. However, I cannot seem to reproduce the results with my images.
(LEFT is predicted, RIGHT is ground truth)
I get this as a result:
I understand that the generated cell labels must be in a certain format, as described on the ISBI-2012 site:
The results are expected to be submitted as a 32-bit TIFF 3D image, which values between 0 (100% membrane certainty) and 1 (100% non-membrane certainty).
However, I have trouble understanding how exactly to save my images in this format. Is there any way to fix this issue?