Seed must be between 0 and 4294967295

Running job cp on bc113
time /projects/mikem/cellprofiler/bin/python /projects/mikem/cellprofiler/src/CellProfiler/CellProfiler.py --jvm-heap-size=60g -p /projects/mikem/test1/output/Batch_data.h5 -c -r -f 1 -l 2
Version: 2014-11-04T15:34:33 2.1.1 / 20141104153433
Could not load cellprofiler.modules.ilastik_pixel_classification
Traceback (most recent call last):
File “/projects/mikem/cellprofiler/src/CellProfiler/cellprofiler/modules/init.py”, line 301, in add_module
m = import(mod, globals(), locals(), ‘all’], 0)
ImportError: No module named ilastik_pixel_classification
could not load these modules: cellprofiler.modules.ilastik_pixel_classification
Times reported are CPU times for each module, not wall-clock time
Fri May 15 13:20:40 2015: Image # 1, module LoadImages # 1: 86.77 sec
Error detected during run of module IdentifyPrimaryObjects
Traceback (most recent call last):
File “/projects/mikem/cellprofiler/src/CellProfiler/cellprofiler/pipeline.py”, line 1799, in run_with_yield
module.run(workspace)
File “/projects/mikem/cellprofiler/src/CellProfiler/cellprofiler/modules/identifyprimaryobjects.py”, line 936, in run
labeled_image, object_count)
File “/projects/mikem/cellprofiler/src/CellProfiler/cellprofiler/modules/identifyprimaryobjects.py”, line 1031, in limit_object_count
r.seed(abs(np.sum(labeled_image)))
File “mtrand.pyx”, line 646, in mtrand.RandomState.seed (numpy/random/mtrand/mtrand.c:7697)
ValueError: Seed must be between 0 and 4294967295
Fri May 15 13:21:32 2015: Image # 1, module IdentifyPrimaryObjects # 2: 5871.46 sec
Exiting the JVM monitor thread

Long story short, this is a bug due to a random number generator exceeding the allowed bounds. Could you try your pipeline on the trunk build available at cellprofiler.org/cgi-bin/trunk_build.cgi ?

Thanks,
-Mark