Script to read CZI and other image files via BioFormats inside MATLAB

Since a few people (in our company) recently asked again, what would be the easiest way to read CZI files into MATLAB, my answer was always use BioFormats.

So maybe some of you might find this little (and limited) scripts useful as well. It can be found here:

https://github.com/zeiss-microscopy/OAD/tree/master/Scripts/MATLAB

It is using the MATLAB wrapper for BioFormats to read CZI files (and other 3rd party image formats as well) including some of the relevant meta-information. Use it at your own risk … :slight_smile:

2 Likes