Hi ! I just started with Qupath and I am looking for a way to compute intensities of cytoplasmic (and non-nuclear) zones. Is there a way to do this, also by proposing scores in relation to staining?
Hmm, missed this one somehow. Cytoplasmic intensities should be calculated automatically, by which I mean mean intensities for various channels or stain vectors are included for the expansion area called the cytoplasm. It doesn’t necessarily match up with the real cytoplasm.
See more here.
Would need more details, otherwise.