Hi OME team,
We regularly image TMA (tissue micro-array) slides with a Zeiss Axioscan. The resulting CZI files store the individual TMA cores as Scenes. OMERO/Bio-Formats happily reads those Scenes but assign a numbering scheme that makes the ordering of the Scenes problematic. Two issues:
- in Zeiss/ZEN the scene numbering starts with 1, while in OMERO the scene numbering starts with 0
- the scene numbers being assigned there is no zero padding so the core order when displayed in OMERO is 0, 10, 11, 12, 13,…, 1, 20, 21, etc. instead of 0, 1, 2, 3, 4, etc. Would it be possible to zero-pad the assigned Scene numbers?