I am very happy with how SNT allows me to manually add “dendritic spines” to a dendrite, with each listed as a separate path. I have been able to fill out each individual spine with the “fill out”, and set a threshold, and I can even do all the spines at once. However, if I do them all at once I can’t get/export separate volumes for each spine. Anyone have a way to do this? Doing each of hundreds of spines separately is not feasible.
I was thinking of trying to make a macro that would go through each path and fill it, but with all the button pressing it requires its not straightforward.
Thanks for any help anyone has.