SaveImages Mask Error

When I select mask as the type of image to save in the SaveImages Module, the mask I created in my previous MaskObjects module is not an option. I would like to export a .tiff file where each masked object is a unique number. Is there a way to do this on CellProfiler?


Hi @sjl,

MaskObjects applies a mask to a set of objects. While the mask that’s applied can be an image, the module always outputs a set of objects. You may be looking for the MaskImage module, or alternatively you could run the ConvertObjectsToImage module before SaveImages.

Hope that helps

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