Save or export an image stack with image ID and markers

I am using Cell Counter to count cells and I want to save ROIs, image ID and markers on each image of the stack. But if I click on SAVE AS (tiff) to save the stack, I only can save ROIs; if I EXPORT IMAGE, I have to export one image at time, for example, if I have 6 images (with different IDs) on that stack, I need to export six times in order to save the markers on each image. Moreover, the original image ID and ROIs doesn’t show on the exported images. Does anybody have any clues to solve this issue? Thanks a lot.