This is with CellProfiler 3.1.8
I have multiple images, say 100, named 1, 2 3…
On each images, I have several, say 50, fluorescent nuclei, easily identified as PrimaryObjects with CellProfiler.
I use SaveCroppedObjects to get individual cropped images of all identified nuclei, named: IdentifyPrimaryObjects_1.tiff, IdentifyPrimaryObjects_2.tiff,…
This is fine when working on a single image. Unfortunately, when analyzing the second image, the cropped objects are saved in the same directory under the same names as those of the first image (IdentifyPrimaryObjects_1.tiff, IdentifyPrimaryObjects_2.tiff,…), and thus replace the CroppedObject images of the previous image…
Is there a way to add to the CroppedObject image names the name of the image they were extracted from? This way, they would all be saved with unique names, something like :
Thanks for reading!