in the old Batch_data.mat one could extract the total number of sets with
batch_info = loadmat("%(datadir)s/Batch_data.mat"%(locals()))
num_sets = batch_info’handles’].Current.NumberOfImageSets
however, in the new Batch_data.mat the main variable seems to be “Settings” and not “handles” and i cannot find the “NumberOfImageSets”
could you please tell me where this is “hidden” ?!
or some other way…in fact i am not sure whether the Batch_data.mat is really needed (see ii)
and another question: when running CellProfiler in the headless mode, must the input pipeline actually be the BachData.mat or can it also be the corresponding pipeline.cp file?
what is the difference? some first tests on our cluster seemed to indicate that it works to run CP with the -p option specifying a normal .cp pipeline…
(iii) Regarding the output files:
- is it possible to also give the *.csv output files unique names during the batch analysis? e.g. dependent on the sets that are contained in them?