I’ve just started to use ilastik and have been trying to set up a workflow to analyze a bunch of plates. Our IN Cell microscope generates images with this organization;
Plate1\A01 - FITC.tif
Plate1\A01 - DAPI.tif
(and so on for all wells and multiple plates).
The classification training for the DAPI channel is pointless against the FITC images and vice versa. Is it possible to set up a filter inside ilastik to only apply classification to a subset of loaded images? It’s easier to drag an entire plate folder(s) into the batch processing module than to manually select 384*N images for a specific channel. Presumably, this will also speed up processing since the classifications will then only be applied to the matching channel.