Hi 
! I am an ImageJ beginner and I am trying to automatize an image analysis, but I am finding some troubles when I try to perform macro programing.
I am able to export the images to analyze from a file but when I add them to the ROI manager and I try to rename each ROI with the name of each picture all ROIs in the manager are renamed with the name of the latest picture. In addition, I would like to have this labels in the excel file that I export with the results if it is possible.
I would appreciate any help. This is my macro;
//Take images
input_path = getDirectory(“path”);
fileList = getFileList(input_path);//Looping for all images
for (f = 0; f < fileList.length; f++) {
open(fileList[f]);
title = getTitle();
selectWindow(title);//Duplicate
run(“Duplicate…”, " ");//Thresholding
run(“Auto Threshold”, “method=MaxEntropy white”);
run(“Gaussian Blur…”, “sigma=2”);
setOption(“BlackBackground”, true);
run(“Make Binary”);
run(“Fill Holes”);//ROI detection and measuring
run(“Analyze Particles…”, “size=200-Infinity display include add”);
}for ( i =0; i< roiManager(“count”); i++) {
roiManager (“select”, i);
roiManager(“Rename”, getTitle());}
saveAs(“Results”, “/path.xls”);
run(“Close All”);